Index

A

Accelerator (class in model.accelerators.accelerator) AcceleratorDefinitionError add_argument_dict() (utils.dict_tools.DictParser method) add_bbq_data() (in module tune_analysis.kickac_modifiers) add_column_datatypes() (tfs_files.tfs_file_writer.TfsFileWriter method) add_column_names() (tfs_files.tfs_file_writer.TfsFileWriter method) add_comment() (tfs_files.tfs_file_writer.TfsFileWriter method) add_corrected_natural_tunes() (in module tune_analysis.kickac_modifiers) add_float_descriptor() (tfs_files.tfs_file_writer.TfsFileWriter method) add_header_line() (tfs_files.tfs_file_writer.TfsFileWriter method) add_int_descriptor() (tfs_files.tfs_file_writer.TfsFileWriter method) add_module_handler() (in module utils.logging_tools) add_moving_average() (in module tune_analysis.kickac_modifiers)

add_odr() (in module tune_analysis.kickac_modifiers) add_parameter() (utils.dict_tools.DictParser method) (utils.entrypoint.EntryPointParameters method) add_params_to_generic() (in module utils.entrypoint) add_root_handler() (in module utils.logging_tools) add_string_descriptor() (tfs_files.tfs_file_writer.TfsFileWriter method) add_table_row() (tfs_files.tfs_file_writer.TfsFileWriter method) add_total_natq_std() (in module tune_analysis.kickac_modifiers) amplitude_detuning_analysis (module) analyse_with_bbq_corrections() (in module amplitude_detuning_analysis) append_error_message() (in module utils.error_handling) append_string_to_textfile() (in module utils.iotools) ArgumentError, [1], [2] assertion() (in module utils.error_handling)

B

BoolOrList (class in utils.entry_datatypes)

BoolOrString (class in utils.entry_datatypes)

C

calc_ac_dipole_driving_terms() (twiss_optics.optics_class.TwissOptics method) calc_chromatic_beating() (twiss_optics.optics_class.TwissOptics method) calc_chromatic_coupling() (twiss_optics.optics_class.TwissOptics method) calc_cmatrix() (twiss_optics.optics_class.TwissOptics method) calc_linear_chromaticity() (twiss_optics.optics_class.TwissOptics method) calc_linear_dispersion() (twiss_optics.optics_class.TwissOptics method) calc_rdts() (twiss_optics.optics_class.TwissOptics method) calc_second_order_dispersion() (twiss_optics.optics_class.TwissOptics method) change_color_brightness() (in module plotshop.plot_style) change_ebar_alpha_for_axes() (in module plotshop.plot_style) change_ebar_alpha_for_line() (in module plotshop.plot_style) check_input() (in module GetLLM.getsuper) circular_error() (in module utils.stats) circular_mean() (in module utils.stats) clean_by_tune() (in module harmonic_analysis.harpy) clear() (tfs_files.tfs_collection.TfsCollection method) convert_files() (in module utils.ADDbpmerror) convert_local_time_to_utc() (in module online_model.data_converter) convert_utc_time_to_local() (in module online_model.data_converter)

copy_content_of_dir() (in module utils.iotools) copy_item() (in module utils.iotools) correction.correct (module) correction.correct_ChromCoup (module) correction.correct_coupleDy (module) correction.fullresponse.generateFullResponse_parallel (module) correction.fullresponse.response_madx (module) correction.fullresponse.response_twiss (module) correction.GenMatrix (module) correction.GenMatrix_chromcouple (module) correction.GenMatrix_coupleDy (module) correction.getdiff (module) create_dirs() (in module utils.iotools) create_job_for_bashfile() (in module utils.htcondor_wrapper) create_multijob_for_bashfiles() (in module utils.htcondor_wrapper) create_parameter_help() (in module utils.entrypoint) create_response() (in module correction.fullresponse.response_twiss) (in module generate_fullresponse_pandas) create_subfile_from_job() (in module utils.htcondor_wrapper)

D

DebugMode (class in utils.logging_tools) define_plot_style() (twiss_optics.optics_class.TwissOptics method) delete_content_of_dir() (in module utils.iotools) delete_item() (in module utils.iotools) deleteFilesWithoutGitignore() (in module utils.iotools) DepInjector (class in GetLLM.GetLLM) DepInjector.MissingRequirementError detect_bpms_with_exact_zeros() (in module harmonic_analysis.clean) detect_bpms_with_spikes() (in module harmonic_analysis.clean)

detect_flat_bpms() (in module harmonic_analysis.clean) detect_known_bad_bpms() (in module harmonic_analysis.clean) dict_mul() (in module correction.fullresponse.response_twiss) DictAsString (class in utils.entry_datatypes) DictParser (class in utils.dict_tools) do_linear_odr() (in module tune_analysis.detuning_tools) DotDict (class in utils.dict_tools) dphi() (in module twiss_optics.twiss_functions) dpps() (measure_optics.InputFiles method)

E

effective_sample_size() (in module utils.stats) Element (class in model.accelerators.accelerator) entrypoint (class in utils.entrypoint) EntryPointParameters (class in utils.entrypoint) Esrf (class in model.accelerators.esrf)

export_plots() (in module plotshop.plot_tfs) extract_all_knob_names() (in module online_model.extractor_wrapper) extract_between_times() (in module tune_analysis.timber_extract) extract_knob_value_and_definition() (in module online_model.extractor_wrapper) extract_overview() (in module online_model.extractor_wrapper)

F

file_handler() (in module utils.logging_tools)

filterbpm() (in module utils.bpm) fix_polarity() (in module harmonic_analysis.clean)

G

generate_fullresponse() (in module correction.fullresponse.response_madx) generate_fullresponse_pandas (module) get_accel_class() (in module model.manager) get_accel_class_and_unkown() (in module model.manager) get_accel_class_from_args() (in module model.manager) get_accel_instance() (in module model.manager) get_action_col() (in module tune_analysis.constants) get_action_err_col() (in module tune_analysis.constants) get_all_absolute_filenames_in_dir_and_subdirs() (in module utils.iotools) get_all_dir_names_in_dir() (in module utils.iotools) get_all_filenames_in_dir() (in module utils.iotools) get_all_filenames_in_dir_and_subdirs() (in module utils.iotools) get_all_rdts() (in module twiss_optics.twiss_functions) get_ampdet_data() (in module tune_analysis.kickac_modifiers) get_annotation() (in module plotshop.plot_style) get_basic_seq_job() (model.accelerators.accelerator.Accelerator method) (model.accelerators.lhc.Lhc method) get_bbq_col() (in module tune_analysis.constants) get_best_knowledge_model_tfs() (model.accelerators.accelerator.Accelerator method) (model.accelerators.lhc.Lhc method) get_beta() (correction.fullresponse.response_twiss.TwissResponse method) get_beta_beat() (correction.fullresponse.response_twiss.TwissResponse method) get_change_filename_out() (in module online_model.constants) get_chromatic_beating() (twiss_optics.optics_class.TwissOptics method) get_class() (model.accelerators.accelerator.Accelerator class method) (model.accelerators.esrf.Esrf class method) (model.accelerators.lhc.Lhc class method) (model.accelerators.psbooster.Psbooster class method) get_class_and_unknown() (model.accelerators.lhc.Lhc class method) (model.accelerators.psbooster.Psbooster class method) get_class_parameters() (model.accelerators.accelerator.Accelerator static method) get_cmatrix() (twiss_optics.optics_class.TwissOptics method) get_columns() (measure_optics.InputFiles static method) get_commonbpm() (in module model.accelerators.accelerator) get_correctors_variables() (model.accelerators.accelerator.Accelerator class method) get_coupling() (correction.fullresponse.response_twiss.TwissResponse method) (twiss_optics.optics_class.TwissOptics method) get_data() (measure_optics.InputFiles method) get_default_knob_summary_filename() (in module online_model.constants) get_default_orbit_filename() (in module online_model.constants) get_delta() (in module correction.fullresponse.response_twiss) get_diff_two_dataframes() (in module tfs_files.diff_files) get_dispersion() (correction.fullresponse.response_twiss.TwissResponse method) get_driven_tfs() (model.accelerators.accelerator.Accelerator method) (model.accelerators.lhc.Lhc method) get_element_types_mask() (model.accelerators.accelerator.Accelerator class method) (model.accelerators.esrf.Esrf class method) (model.accelerators.lhc.Lhc class method) (model.accelerators.psbooster.Psbooster class method) get_elements_tfs() (model.accelerators.accelerator.Accelerator method) (model.accelerators.lhc.Lhc method) get_errorbar_data() (in module plotshop.post_processing) get_errordefspath() (model.accelerators.lhc.Lhc method) get_exciter_bpm() (model.accelerators.accelerator.Accelerator method) (model.accelerators.lhc.Lhc method) get_exciter_name() (model.accelerators.accelerator.Accelerator method) (model.accelerators.lhc.Lhc method) get_experiment_timezone() (in module online_model.constants) (in module tune_analysis.constants) get_extractor_knobs_filename() (in module online_model.constants) get_extractor_log_filename() (in module online_model.constants) get_extractor_output_filename() (in module online_model.constants) get_figure() (plotshop.fig_editor.main_window.MainWindow method) get_filename() (segment_by_segment.segment_by_segment.SegmentBeatings method) (segment_by_segment.segment_by_segment.SegmentModels method) (tfs_files.tfs_collection.TfsCollection method) get_fill_from_orbitfile() (in module online_model.data_converter) get_fill_times() (in module tune_analysis.timber_extract) get_filter_mask() (in module utils.outliers) get_gamma() (twiss_optics.optics_class.TwissOptics method) get_instance_faker_meta() (in module utils.entry_datatypes) get_ip_positions() (in module plotshop.plot_style) get_ips() (model.accelerators.lhc.Lhc class method) get_iteration_tmpl() (model.accelerators.accelerator.Accelerator class method) (model.accelerators.lhc.Lhc class method) (model.accelerators.psbooster.Psbooster class method)

get_k_first_BPM() (model.accelerators.accelerator.Accelerator method) (model.accelerators.lhc.Lhc method) get_knob_tfs_filename() (in module online_model.constants) get_knobs_and_trims_from_log() (in module online_model.data_converter) get_ktype() (in module online_model.constants) get_legend_ncols() (in module plotshop.plot_style) get_line_data() (in module plotshop.post_processing) get_linear_chromaticity() (twiss_optics.optics_class.TwissOptics method) get_linear_dispersion() (twiss_optics.optics_class.TwissOptics method) get_list_of_tuples() (in module utils.bpm) get_logger() (in module utils.logging_tools) get_marker() (in module plotshop.plot_tfs) (plotshop.plot_style.MarkerList class method) get_mav_col() (in module tune_analysis.constants) get_mav_std_col() (in module tune_analysis.constants) get_model_tfs() (model.accelerators.accelerator.Accelerator method) (model.accelerators.lhc.Lhc method) get_moving_average() (in module tune_analysis.bbq_tools) get_multi_class() (in module utils.entry_datatypes) get_multi_dpp_job() (model.accelerators.accelerator.Accelerator method) (model.accelerators.lhc.Lhc method) get_name() (in module plotshop.plot_style) get_natq_col() (in module tune_analysis.constants) get_natq_corr_col() (in module tune_analysis.constants) get_natq_err_col() (in module tune_analysis.constants) get_next_marker() (plotshop.plot_style.MarkerList method) get_next_scientific_exponent() (in module utils.math_tools) get_nominal_tmpl() (model.accelerators.accelerator.Accelerator class method) (model.accelerators.lhc.Lhc class method) (model.accelerators.psbooster.Psbooster class method) get_norm_dispersion() (correction.fullresponse.response_twiss.TwissResponse method) get_odr_data() (in module tune_analysis.kickac_modifiers) get_odr_header_offset() (in module tune_analysis.constants) get_odr_header_offset_corr() (in module tune_analysis.constants) get_odr_header_slope() (in module tune_analysis.constants) get_odr_header_slope_corr() (in module tune_analysis.constants) get_odr_header_slope_std() (in module tune_analysis.constants) get_odr_header_slope_std_corr() (in module tune_analysis.constants) get_om_extractor() (in module online_model.constants) get_optics() (in module online_model.data_converter) get_overview_filename() (in module online_model.constants) get_paired_lables() (in module tune_analysis.constants) get_phase() (correction.fullresponse.response_twiss.TwissResponse method) get_phase_adv() (correction.fullresponse.response_twiss.TwissResponse method) (twiss_optics.optics_class.TwissOptics method) get_phase_advances() (in module twiss_optics.twiss_functions) get_planes() (in module tune_analysis.constants) get_rdts() (twiss_optics.optics_class.TwissOptics method) get_response_for() (correction.fullresponse.response_twiss.TwissResponse method) get_s_first_BPM() (model.accelerators.accelerator.Accelerator method) (model.accelerators.lhc.Lhc method) get_subdict() (in module utils.dict_tools) (utils.dict_tools.DotDict method) get_tend_head() (in module tune_analysis.constants) get_timber_bbq_key() (in module tune_analysis.constants) get_time_col() (in module tune_analysis.constants) get_time_format() (in module online_model.constants) get_total_natq_std_col() (in module tune_analysis.constants) get_tstart_head() (in module tune_analysis.constants) get_tune() (correction.fullresponse.response_twiss.TwissResponse method) get_tune_and_coupling_variables() (in module tune_analysis.timber_extract) get_update_correction_job() (model.accelerators.accelerator.Accelerator method) (model.accelerators.lhc.Lhc method) get_used_in_mav_col() (in module tune_analysis.constants) get_utc_now() (in module online_model.data_converter) get_variables() (model.accelerators.accelerator.Accelerator class method) (model.accelerators.lhc.Lhc class method) getdiff() (in module correction.getdiff) GetLLM.GetLLM (module) GetLLM.getsuper (module) getLogger() (in module utils.logging_tools) global_correct_iterative (module) global_correction() (in module global_correct_iterative)

H

harmonic_analysis() (in module harmonic_analysis.harpy) harmonic_analysis.chroma (module) harmonic_analysis.clean (module) harmonic_analysis.get_optics_3D (module) harmonic_analysis.harpy (module) harmonic_analysis.io_handlers.input_handler (module) harmonic_analysis.io_handlers.output_handler (module) harmonic_analysis.tune_clean (module) harmonic_analysis_bpm() (in module harmonic_analysis.harpy)

harmonic_analysis_svd() (in module harmonic_analysis.harpy) harpy() (in module harmonic_analysis.harpy) help() (utils.entrypoint.EntryPointParameters method) HlLhc10 (class in model.accelerators.lhc) HlLhc12 (class in model.accelerators.lhc) HlLhc12NewCircuit (class in model.accelerators.lhc) HlLhc12NoQ2Trim (class in model.accelerators.lhc) HlLhc13 (class in model.accelerators.lhc) hole_in_one (module)

I

iforest_for_bpms (module) improve_segment() (in module segment_by_segment.segment_by_segment) init_and_get_unknowns() (model.accelerators.lhc.Lhc class method) (model.accelerators.psbooster.Psbooster class method) initial() (GetLLM.GetLLM.DepInjector method)

input_file (in module madx_wrapper) input_string (in module madx_wrapper) InputFiles (class in measure_optics) intersect() (in module utils.bpm) intersect_with_bpm_list() (in module utils.bpm)

J

joined_frame() (measure_optics.InputFiles method)

json_dumps_readable() (in module utils.iotools) jws_wrapper (module)

K

knobs_k_to_tfs() (in module online_model.data_converter)

knobs_kvalues_to_tfs() (in module online_model.data_converter)

L

Lhc (class in model.accelerators.lhc) lhc_fill_to_tfs() (in module tune_analysis.timber_extract) LhcAts (class in model.accelerators.lhc) LhcRunI (class in model.accelerators.lhc) LhcRunII2015 (class in model.accelerators.lhc) LhcRunII2016 (class in model.accelerators.lhc) LhcRunII2016Ats (class in model.accelerators.lhc)

LhcRunII2017 (class in model.accelerators.lhc) LhcRunII2018 (class in model.accelerators.lhc) linear_model() (in module tune_analysis.detuning_tools) linreg() (in module GetLLM.getsuper) log_file (in module madx_wrapper), [1] log_pandas_settings_with_copy() (in module utils.logging_tools) logging_silence() (in module utils.logging_tools) lower() (in module twiss_optics.twiss_functions)

M

mad() (in module utils.math_tools) madx_path (in module madx_wrapper), [1] madx_wrapper (module) MadxError main() (in module GetLLM.GetLLM) (in module GetLLM.getsuper) (in module utils.print_cprofile) MainWindow (class in plotshop.fig_editor.main_window) make_list() (in module correction.GenMatrix_chromcouple) (in module correction.GenMatrix_coupleDy) make_top_legend() (in module plotshop.plot_style) MarkerList (class in plotshop.plot_style)

MaxFilter (class in utils.logging_tools) measure_optics (module) measure_optics() (in module measure_optics) merge_two_plots() (in module plotshop.post_processing) model.accelerators.accelerator (module) model.accelerators.esrf (module) model.accelerators.lhc (module) model.accelerators.psbooster (module) model.creator (module) model.manager (module) model_intersect() (in module utils.bpm) move_ip_labels() (in module plotshop.plot_style)

O

online_model.constants (module) online_model.data_converter (module) online_model.extractor_wrapper (module)

OOMFormatter (class in plotshop.plot_style) open() (tfs_files.tfs_file_writer.TfsFileWriter static method) order_rows() (tfs_files.tfs_file_writer.TfsFileWriter method) output_file (in module madx_wrapper), [1]

P

param_names() (in module utils.entrypoint) Parameter (class in utils.dict_tools) ParameterError parse_arguments() (utils.dict_tools.DictParser method) parse_config_items() (utils.dict_tools.DictParser method) plot() (in module plotshop.plot_tfs) plot_bbq_data() (in module amplitude_detuning_analysis) (in module tune_analysis.bbq_tools) plot_chromatic_beating() (twiss_optics.optics_class.TwissOptics method) plot_detuning() (in module tune_analysis.detuning_tools) plot_linear_dispersion() (twiss_optics.optics_class.TwissOptics method)

plot_linear_odr() (in module tune_analysis.detuning_tools) plot_phase_advance() (twiss_optics.optics_class.TwissOptics method) plot_rdts() (twiss_optics.optics_class.TwissOptics method) plotshop.fig_editor.main_window (module) plotshop.plot_style (module) plotshop.plot_tfs (module) plotshop.post_processing (module) post_trim_extract() (in module online_model.data_converter) print_dict_tree() (in module utils.dict_tools) print_odr_result() (in module tune_analysis.detuning_tools) Psbooster (class in model.accelerators.psbooster)

R

rdt_generator() (in module twiss_optics.twiss_functions) read_tfs() (in module tfs_files.tfs_pandas) (tfs_files.tfs_collection.TfsCollection method) remove_bpms_from_file() (in module iforest_for_bpms) remove_header_comments_from_files() (in module tfs_files.tfs_utils) remove_nan_from_files() (in module tfs_files.tfs_utils) replace_error_message() (in module utils.error_handling)

replace_keywords_in_textfile() (in module utils.iotools) resolve_and_run_file() (in module madx_wrapper) resolve_and_run_string() (in module madx_wrapper) response_add() (in module correction.fullresponse.response_twiss) resync_bpms() (in module harmonic_analysis.clean) revert_forest_cleaning() (in module iforest_for_bpms) run_for_segment() (in module segment_by_segment.segment_by_segment)

S

SbsDefinitionError segment_by_segment() (in module segment_by_segment.segment_by_segment) segment_by_segment.segment_by_segment (module) SegmentBeatings (class in segment_by_segment.segment_by_segment) SegmentModels (class in segment_by_segment.segment_by_segment) set_annotation() (in module plotshop.plot_style) set_name() (in module plotshop.plot_style) set_sci_magnitude() (in module plotshop.plot_style) set_style() (in module plotshop.plot_style) set_xaxis_label() (in module plotshop.plot_style)

set_xLimits() (in module plotshop.plot_style) set_yaxis_label() (in module plotshop.plot_style) show_ir() (in module plotshop.plot_style) show_log() (plotshop.fig_editor.main_window.MainWindow method) small_title() (in module plotshop.plot_style) split_arguments() (in module utils.entrypoint) stream_handler() (in module utils.logging_tools) submit_job() (in module utils.htcondor_wrapper) submit_jobfile() (in module utils.htcondor_wrapper) suppress_exception() (in module utils.contexts) sync2d() (in module plotshop.plot_style)

T

t_value_correction() (in module utils.stats) tau() (in module twiss_optics.twiss_functions) TempFile (class in utils.logging_tools) temporary_file_path() (in module utils.contexts) Tfs (class in tfs_files.tfs_collection) tfs_files.diff_files (module) tfs_files.tfs_collection (module) tfs_files.tfs_file_writer (module) tfs_files.tfs_pandas (module) tfs_files.tfs_utils (module) TfsCollection (class in tfs_files.tfs_collection) TfsDataFrame (class in tfs_files.tfs_pandas) TfsFileWriter (class in tfs_files.tfs_file_writer)

TfsFormatError transpose_legend() (in module plotshop.post_processing) tree() (utils.dict_tools.DictParser method) trigger() (GetLLM.GetLLM.DepInjector method) tune_analysis.bbq_tools (module) tune_analysis.constants (module) tune_analysis.detuning_tools (module) tune_analysis.kickac_modifiers (module) tune_analysis.timber_extract (module) twiss_optics.optics_class (module) twiss_optics.twiss_functions (module) TwissOptics (class in twiss_optics.optics_class) TwissResponse (class in correction.fullresponse.response_twiss) TypeToIdConverter (class in tfs_files.tfs_pandas)

U

unbias_variance() (in module utils.stats) unformatted_console_logging() (in module utils.logging_tools) update_figure() (plotshop.fig_editor.main_window.MainWindow method) upper() (in module twiss_optics.twiss_functions) utils.absolute_ratio_beta_amp_beta_phase (module) utils.ADDbpmerror (module) utils.bpm (module) utils.contexts (module) utils.convert2json (module) utils.dict_tools (module) utils.entry_datatypes (module)

utils.entrypoint (module) utils.error_handling (module) utils.htcondor_wrapper (module) utils.iotools (module) utils.logging_tools (module) utils.math_tools (module) utils.outliers (module) utils.print_cprofile (module) utils.read_bet_deviations (module) utils.reindent (module) utils.stats (module)

V

Variable (class in model.accelerators.accelerator) verify_object() (model.accelerators.accelerator.Accelerator method) (model.accelerators.lhc.Lhc method) (model.accelerators.psbooster.Psbooster method)

W

weighted_error() (in module utils.stats) weighted_mean() (in module utils.stats) weighted_rms() (in module utils.stats) weights_from_errors() (in module utils.stats) write_beatings() (in module segment_by_segment.segment_by_segment)

write_madx_bash() (in module utils.htcondor_wrapper) write_string_into_new_file() (in module utils.iotools) write_tfs() (in module tfs_files.tfs_pandas) write_to() (tfs_files.tfs_collection.TfsCollection method) write_to_file() (tfs_files.tfs_file_writer.TfsFileWriter method)